Hive_ML_model_fitting script

Script to run 5-CV Forward Model Fitting (after performing Feature Selection) on a Feature Set. The Metrics evaluation summary (in Excel format) is saved in the experiment folder, defined by the experiment_name argument.

usage: Hive_ML_model_fitting [-h] --feature-file FEATURE_FILE --config-file
                             CONFIG_FILE --experiment-name EXPERIMENT_NAME
                             [--split-file SPLIT_FILE] [-v | -q]

Named Arguments

--feature-file

Input Dataset folder

--config-file

Configuration JSON file with experiment and dataset parameters.

--experiment-name

Experiment name used to save the model fitting metrics evaluation summary.

--split-file

Split file used to split the data into train and test sets.

-v, --verbose

Enable verbose output in terminal. Add multiple times to increase verbosity.

-q, --silent

Suppress most log outputs in terminal.

Example call:

Hive_ML_model_fitting.py -feature-file /path/to/feature_table.csv --config-file config_file.json --experiment-name Radiomics